Publications

Antoine Villié, Philippe Veber, Yohann de Castro, Laurent Jacob (2023). Neural Networks beyond explainability: Selective inference for sequence motifs. TMLR.

PDF Cite Code

Hector Roux de Bézieux, Leandro Lima, Fanny Perraudeau, Arnaud Mary, Sandrine Dudoit, Laurent Jacob (2022). CALDERA: Finding all significant de Bruijn subgraphs for bacterial GWAS. ISMB.

PDF Cite Code Video

Luca Nesterenko, Bastien Boussau, Laurent Jacob (2022). Phyloformer: towards fast and accurate phylogeny estimation with self-attention networks. bioRxiv.

PDF Cite Code Video

Dexiong Chen, Julien Mairal, Laurent Jacob (2019). Biological sequence modeling with convolutional kernel networks. Bioinformatics.

PDF Cite Code

Magali Jaillard, Leandro Lima, Maud Tournoud, Pierre Mahé, Alex van Belkum, Vincent Lacroix, Laurent Jacob (2018). A fast and agnostic method for bacterial genome-wide association studies: Bridging the gap between k-mers and genetic events. PLOS Genetics.

PDF Cite Code